5CVJ

Monolignol 4-O-methyltransferase 5 - coniferyl alcohol

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A [auth D]	d5cvjd1	All alpha proteins	DNA/RNA-binding 3-helical bundle	'Winged helix' DNA-binding domain	automated matches	automated matches	Fairy fans (Clarkia breweri ) [TaxId: 36903 ],	SCOPe (2.08)
A [auth D]	d5cvjd2	Alpha and beta proteins (a/b)	S-adenosyl-L-methionine-dependent methyltransferases	S-adenosyl-L-methionine-dependent methyltransferases	Plant O-methyltransferase, C-terminal domain	automated matches	Fairy fans (Clarkia breweri ) [TaxId: 36903 ],	SCOPe (2.08)
B [auth A]	d5cvja1	All alpha proteins	DNA/RNA-binding 3-helical bundle	'Winged helix' DNA-binding domain	automated matches	automated matches	Fairy fans (Clarkia breweri ) [TaxId: 36903 ],	SCOPe (2.08)
B [auth A]	d5cvja2	Alpha and beta proteins (a/b)	S-adenosyl-L-methionine-dependent methyltransferases	S-adenosyl-L-methionine-dependent methyltransferases	Plant O-methyltransferase, C-terminal domain	automated matches	Fairy fans (Clarkia breweri ) [TaxId: 36903 ],	SCOPe (2.08)
C [auth B]	d5cvjb1	All alpha proteins	DNA/RNA-binding 3-helical bundle	'Winged helix' DNA-binding domain	automated matches	automated matches	Fairy fans (Clarkia breweri ) [TaxId: 36903 ],	SCOPe (2.08)
C [auth B]	d5cvjb2	Alpha and beta proteins (a/b)	S-adenosyl-L-methionine-dependent methyltransferases	S-adenosyl-L-methionine-dependent methyltransferases	Plant O-methyltransferase, C-terminal domain	automated matches	Fairy fans (Clarkia breweri ) [TaxId: 36903 ],	SCOPe (2.08)
D [auth C]	d5cvjc1	All alpha proteins	DNA/RNA-binding 3-helical bundle	'Winged helix' DNA-binding domain	automated matches	automated matches	Fairy fans (Clarkia breweri ) [TaxId: 36903 ],	SCOPe (2.08)
D [auth C]	d5cvjc2	Alpha and beta proteins (a/b)	S-adenosyl-L-methionine-dependent methyltransferases	S-adenosyl-L-methionine-dependent methyltransferases	Plant O-methyltransferase, C-terminal domain	automated matches	Fairy fans (Clarkia breweri ) [TaxId: 36903 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth D]	SCOP2B Superfamily	S-adenosyl-L-methionine-dependent methyltransferases	8093265	3000118	SCOP2B (2022-06-29)
A [auth D]	SCOP2B Superfamily	Winged helix DNA-binding domain	8093264	3000034	SCOP2B (2022-06-29)
B [auth A]	SCOP2B Superfamily	S-adenosyl-L-methionine-dependent methyltransferases	8093265	3000118	SCOP2B (2022-06-29)
B [auth A]	SCOP2B Superfamily	Winged helix DNA-binding domain	8093264	3000034	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	S-adenosyl-L-methionine-dependent methyltransferases	8093265	3000118	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	Winged helix DNA-binding domain	8093264	3000034	SCOP2B (2022-06-29)
D [auth C]	SCOP2 Family	Plant O-methyltransferase-like	8081394	4000240	SCOP2 (2022-06-29)
D [auth C]	SCOP2 Superfamily	S-adenosyl-L-methionine-dependent methyltransferases	8093265	3000118	SCOP2 (2022-06-29)
D [auth C]	SCOP2 Superfamily	Winged helix DNA-binding domain	8093264	3000034	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth D]	Dimerisation	e5cvjD2	A: alpha arrays	X: HTH	H: HTH	T: winged	F: Dimerisation	ECOD (1.6)
A [auth D]	Methyltransf_11_4	e5cvjD1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: Methyltransf_11_4	ECOD (1.6)
B [auth A]	Dimerisation	e5cvjA1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: Dimerisation	ECOD (1.6)
B [auth A]	Methyltransf_11_4	e5cvjA2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: Methyltransf_11_4	ECOD (1.6)
C [auth B]	Dimerisation	e5cvjB2	A: alpha arrays	X: HTH	H: HTH	T: winged	F: Dimerisation	ECOD (1.6)
C [auth B]	Methyltransf_11_4	e5cvjB1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: Methyltransf_11_4	ECOD (1.6)
D [auth C]	Dimerisation	e5cvjC1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: Dimerisation	ECOD (1.6)
D [auth C]	Methyltransf_11_4	e5cvjC2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: Methyltransf_11_4	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A [auth D]	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)
A [auth D]	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
B [auth A]	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)
B [auth A]	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
C [auth B]	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)
C [auth B]	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
D [auth C]	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)
D [auth C]	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth D], B [auth A], C [auth B], D [auth C]	PF08100	Plant O-methyltransferase dimerisation domain (Dimerisation)	Dimerisation domain	This domain is found at the N-terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [1].	Domain
A [auth D], B [auth A], C [auth B], D [auth C]	PF00891	O-methyltransferase domain (Methyltransf_2)	O-methyltransferase domain	This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth D], B [auth A], C [auth B], D [auth C]	(Iso)eugenol O-methyltransferase	O-methyltransferase activity (iso)eugenol O-methyltransferase activity transferase activity, transferring one-carbon groups transferase activity methyltransferase activity catalytic activity S-adenosylmethionine-dependent methyltransferase activity protein binding binding protein dimerization activity	methylation metabolic process cellular process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth D], B [auth A], C [auth B], D [auth C]	IPR012967	Plant O-methyltransferase dimerisation domain	Domain
A [auth D], B [auth A], C [auth B], D [auth C]	IPR001077	O-methyltransferase domain	Domain
A [auth D], B [auth A], C [auth B], D [auth C]	IPR016461	O-methyltransferase COMT-type	Family
A [auth D], B [auth A], C [auth B], D [auth C]	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Homologous Superfamily
A [auth D], B [auth A], C [auth B], D [auth C]	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
A [auth D], B [auth A], C [auth B], D [auth C]	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.