5DJT
Crystal structure of LOV2 (C450A) domain in complex with Zdk2
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d5djtb_ | All alpha proteins | immunoglobulin/albumin-binding domain-like | Bacterial immunoglobulin/albumin-binding domains | Immunoglobulin-binding protein A modules | automated matches | (Staphylococcus aureus ) [TaxId: 1280 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PAS | e5djtA1 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PAS | ECOD (1.6) |
B | B | e5djtB1 | A: alpha bundles | X: immunoglobulin/albumin-binding domain-like | H: Bacterial immunoglobulin/albumin-binding domains (From Topology) | T: Bacterial immunoglobulin/albumin-binding domains | F: B | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.450.20 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | PAS domain | CATH (4.3.0) |
B | 1.20.5.420 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | Immunoglobulin FC, subunit C | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF13426 | PAS domain (PAS_9) | PAS domain | This domain is found in many signalling proteins in which it functions as a sensor domain. It recognises FMN, Zn(II), FAD and riboflavin (MAtilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043). | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR017441 | Protein kinase, ATP binding site | Binding Site | |
IPR000014 | PAS domain | Domain | |
IPR011009 | Protein kinase-like domain superfamily | Homologous Superfamily | |
IPR035965 | PAS domain superfamily | Homologous Superfamily | |
IPR001610 | PAC motif | Repeat | |
IPR000700 | PAS-associated, C-terminal | Domain | |
IPR000719 | Protein kinase domain | Domain | |
IPR008271 | Serine/threonine-protein kinase, active site | Active Site |