Crystal Structure of CC Chemokine Receptor 5 (CCR5) in complex with high potency HIV entry inhibitor 5P7-CCL5
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Pharos: Disease Associations
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Protein Modification Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d5uiwb1 | Alpha and beta proteins (a+b) | IL8-like | Interleukin 8-like chemokines | Interleukin 8-like chemokines | RANTES (regulated upon activation, normal T-cell expressed and secreted) | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d5uiwb2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Class A (rhodopsin) G protein-coupled receptor-like | 8091223 | 4001858 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | G protein-coupled receptor-like | 8091224 | 3000473 | SCOP2 (2022-06-29) |
A | SCOP2B Superfamily | Rubredoxin-like | 8039183 | 3001257 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Interleukin 8-like chemokines | 8034294 | 3001955 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | 7tm_1_1 | e5uiwA2 | A: alpha bundles | X: Family A G protein-coupled receptor-like (From Topology) | H: Family A G protein-coupled receptor-like (From Topology) | T: Family A G protein-coupled receptor-like | F: 7tm_1_1 | ECOD (1.6) |
A | Rubredoxin | e5uiwA1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Rubredoxin | ECOD (1.6) |
B | IL8 | e5uiwB1 | A: beta barrels | X: IL8-related (From Homology) | H: IL8-related | T: IL8 | F: IL8 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 2.40.50.40 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00001 | 7 transmembrane receptor (rhodopsin family) (7tm_1) | 7 transmembrane receptor (rhodopsin family) | This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GC ... | Domain | |
PF00301 | Rubredoxin (Rubredoxin) | Rubredoxin | Domain | ||
PF00048 | Small cytokines (intecrine/chemokine), interleukin-8 like (IL8) | Small cytokines (intecrine/chemokine), interleukin-8 like | Includes a number of secreted growth factors and interferons involved in mitogenic, chemotactic, and inflammatory activity. Structure contains two highly conserved disulfide bonds. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000276 | G protein-coupled receptor, rhodopsin-like | Family | |
IPR017452 | GPCR, rhodopsin-like, 7TM | Domain | |
IPR000355 | Chemokine receptor family | Family | |
IPR050119 | C-C chemokine receptor type 1-9-like | Family | |
IPR002240 | CC chemokine receptor 5 | Family | |
IPR050526 | Rubredoxin electron transfer | Family | |
IPR018527 | Rubredoxin, iron-binding site | Binding Site | |
IPR024922 | Rubredoxin | Family | |
IPR024934 | Rubredoxin-like domain | Domain | |
IPR024935 | Rubredoxin domain | Domain | |
IPR001811 | Chemokine interleukin-8-like domain | Domain | |
IPR000827 | CC chemokine, conserved site | Conserved Site | |
IPR036048 | Chemokine interleukin-8-like superfamily | Homologous Superfamily | |
IPR039809 | Chemokine beta/gamma/delta | Family |
Pharos: Disease Associations Pharos Homepage Annotation
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Rhodopsin-like receptors and pumps | G-protein coupled receptors, family A |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |