5YI2 | pdb_00005yi2

Structure of Lactococcus lactis ZitR, wild type in complex with DNA

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	MarR	e5yi2A1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: MarR	ECOD (1.6)
B	MarR	e5yi2B1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: MarR	ECOD (1.6)
D [auth E]	MarR	e5yi2E1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: MarR	ECOD (1.6)
E [auth F]	MarR	e5yi2F1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: MarR	ECOD (1.6)
G [auth I]	MarR	e5yi2I1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: MarR	ECOD (1.6)
H [auth J]	MarR	e5yi2J1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: MarR	ECOD (1.6)
J [auth M]	MarR	e5yi2M1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: MarR	ECOD (1.6)
K [auth N]	MarR	e5yi2N1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: MarR	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	6.10.250.2360	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (utative)
A	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (utative)
A	6.10.140.1680	Special	Helix non-globular	Helix Hairpins		CATH (utative)
B	6.10.250.2360	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (utative)
B	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (utative)
B	6.10.140.1680	Special	Helix non-globular	Helix Hairpins		CATH (utative)
D [auth E]	6.10.250.2360	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (utative)
D [auth E]	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (utative)
D [auth E]	6.10.140.1680	Special	Helix non-globular	Helix Hairpins		CATH (utative)
E [auth F]	6.10.250.2360	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (utative)
E [auth F]	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (utative)
E [auth F]	6.10.140.1680	Special	Helix non-globular	Helix Hairpins		CATH (utative)
G [auth I]	6.10.250.2360	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (utative)
G [auth I]	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (utative)
G [auth I]	6.10.140.1680	Special	Helix non-globular	Helix Hairpins		CATH (utative)
H [auth J]	6.10.250.2360	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (utative)
H [auth J]	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (utative)
H [auth J]	6.10.140.1680	Special	Helix non-globular	Helix Hairpins		CATH (utative)
J [auth M]	6.10.250.2360	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (utative)
J [auth M]	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (utative)
J [auth M]	6.10.140.1680	Special	Helix non-globular	Helix Hairpins		CATH (utative)
K [auth N]	6.10.250.2360	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (utative)
K [auth N]	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (utative)
K [auth N]	6.10.140.1680	Special	Helix non-globular	Helix Hairpins		CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, D [auth E], E [auth F], G [auth I], A, B, D [auth E], E [auth F], G [auth I], H [auth J], J [auth M], K [auth N]	PF01047	MarR family (MarR)	MarR family	The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is t ...	The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds [1]. The structure of MarR is known [2] and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, D [auth E], E [auth F], G [auth I], A, B, D [auth E], E [auth F], G [auth I], H [auth J], J [auth M], K [auth N]	Zinc transport transcriptional regulator	DNA binding binding nucleic acid binding transcription regulator activity DNA-binding transcription factor activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	-	-
C, F [auth G], I [auth K], L [auth O], M [auth D], C, F [auth G], I [auth K], L [auth O], M [auth D], N [auth P], O [auth L], P [auth H]	DNA (5'-D(TPGPTPTPAPAPCPTPAPGPTPTPAPAPCPA)-3')	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, D [auth E], E [auth F], G [auth I], A, B, D [auth E], E [auth F], G [auth I], H [auth J], J [auth M], K [auth N]	IPR000835	MarR-type HTH domain	Domain
A, B, D [auth E], E [auth F], G [auth I], A, B, D [auth E], E [auth F], G [auth I], H [auth J], J [auth M], K [auth N]	IPR052067	Metal-responsive HTH-type transcriptional regulators	Family
A, B, D [auth E], E [auth F], G [auth I], A, B, D [auth E], E [auth F], G [auth I], H [auth J], J [auth M], K [auth N]	IPR047894	Adhesin competence regulator AdcR-like	Family
A, B, D [auth E], E [auth F], G [auth I], A, B, D [auth E], E [auth F], G [auth I], H [auth J], J [auth M], K [auth N]	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
A, B, D [auth E], E [auth F], G [auth I], A, B, D [auth E], E [auth F], G [auth I], H [auth J], J [auth M], K [auth N]	IPR011991	ArsR-like helix-turn-helix domain	Domain
A, B, D [auth E], E [auth F], G [auth I], A, B, D [auth E], E [auth F], G [auth I], H [auth J], J [auth M], K [auth N]	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily