6F58 | pdb_00006f58

Crystal structure of human Brachyury (T) in complex with DNA


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth A]SCOP2B Superfamilyp53-like transcription factors 8062625 3000758 SCOP2B (2022-06-29)
D [auth B]SCOP2 FamilyT-box 8062624 4001850 SCOP2 (2022-06-29)
D [auth B]SCOP2 Superfamilyp53-like transcription factors 8062625 3000758 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth A]T-boxe6f58A1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Common fold of diphtheria toxin/transcription factors/cytochrome fF: T-boxECOD (1.6)
D [auth B]T-boxe6f58B1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Common fold of diphtheria toxin/transcription factors/cytochrome fF: T-boxECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
C [auth A]2.60.40.820 Mainly Beta Sandwich Immunoglobulin-like Transcription factor, T-boxCATH (4.3.0)
D [auth B]2.60.40.820 Mainly Beta Sandwich Immunoglobulin-like Transcription factor, T-boxCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth A],
D [auth B]
PF00907T-box (T-box)T-boxThe T-box encodes a 180 amino acid domain that binds to DNA. Genes encoding T-box proteins are found in a wide range of animals, but not in other kingdoms such as plants. Family members are all thought to bind to the DNA consensus sequence TCACACCT. ...Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth C],
B [auth D]
DNA (5'-D(*AP*AP*TP*TP*TP*CP*AP*CP*AP*CP*CP*TP*AP*GP*GP*TP*GP*TP*GP*AP*AP*AP*TP*T)-3')---
C [auth A],
D [auth B]
Brachyury protein