Bacterial 45SRbgA ribosomal particle class A
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
D [auth E] | SCOP2B Superfamily | Ribosomal protein L4 | 8080694 | 3001146 | SCOP2B (2022-06-29) |
E [auth J] | SCOP2B Superfamily | Ribosomal protein L13 | 8066055 | 3001134 | SCOP2B (2022-06-29) |
I [auth P] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8082419 | 3000334 | SCOP2B (2022-06-29) |
K [auth R] | SCOP2B Superfamily | l21p-like | 8082437 | 3002005 | SCOP2B (2022-06-29) |
L [auth S] | SCOP2B Superfamily | Ribosomal protein L22 | 8076724 | 3001078 | SCOP2B (2022-06-29) |
J [auth Q] | SCOP2B Superfamily | Ribosomal protein L20 | 8075004 | 3000563 | SCOP2B (2022-06-29) |
M [auth T] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8077095 | 3000210 | SCOP2B (2022-06-29) |
N [auth U] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8082505 | 3000334 | SCOP2B (2022-06-29) |
O [auth b] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8081585 | 3001320 | SCOP2B (2022-06-29) |
P [auth Y] | SCOP2B Superfamily | Ribosomal protein L29 (L29p) | 8076730 | 3000713 | SCOP2B (2022-06-29) |
C [auth D] | SCOP2B Superfamily | Translational proteins | 8089142 | 3000811 | SCOP2B (2022-06-29) |
F [auth K] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8072020 | 3000433 | SCOP2B (2022-06-29) |
H [auth N] | SCOP2B Superfamily | Prokaryotic ribosomal protein L17 | 8089014 | 3000995 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D [auth E] | Ribosomal_L4 | e6pvkE1 | A: a/b three-layered sandwiches | X: Ribosomal protein L4 (From Topology) | H: Ribosomal protein L4 (From Topology) | T: Ribosomal protein L4 | F: Ribosomal_L4 | ECOD (1.6) |
E [auth J] | Ribosomal_L13 | e6pvkJ1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L13 and L16-A (From Topology) | T: Ribosomal protein L13 and L16-A | F: Ribosomal_L13 | ECOD (1.6) |
G [auth L] | Ribosomal_L27A | e6pvkL1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: Ribosomal_L27A | ECOD (1.6) |
I [auth P] | Ribosomal_L19 | e6pvkP1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L19 | ECOD (1.6) |
K [auth R] | Ribosomal_L21p | e6pvkR1 | A: beta barrels | X: Ribosomal protein L21p (From Topology) | H: Ribosomal protein L21p (From Topology) | T: Ribosomal protein L21p | F: Ribosomal_L21p | ECOD (1.6) |
L [auth S] | Ribosomal_L22 | e6pvkS1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Ribosomal protein L22 (From Topology) | T: Ribosomal protein L22 | F: Ribosomal_L22 | ECOD (1.6) |
J [auth Q] | Ribosomal_L20 | e6pvkQ1 | A: alpha arrays | X: PABP domain-like | H: Ribosomal protein L20 (From Topology) | T: Ribosomal protein L20 | F: Ribosomal_L20 | ECOD (1.6) |
M [auth T] | Ribosomal_L23_2 | e6pvkT1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: Ribosomal_L23_2 | ECOD (1.6) |
N [auth U] | ribosomal_L24_1 | e6pvkU1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: ribosomal_L24_1 | ECOD (1.6) |
O [auth b] | Ribosomal_L32p | e6pvkb1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L32p | ECOD (1.6) |
P [auth Y] | Ribosomal_L29 | e6pvkY1 | A: alpha bundles | X: Long alpha-hairpin | H: Ribosomal protein L29 (L29p) (From Topology) | T: Ribosomal protein L29 (L29p) | F: Ribosomal_L29 | ECOD (1.6) |
Q [auth d] | Ribosomal_L34 | e6pvkd1 | A: extended segments | X: 50S ribosomal protein L34 (From Topology) | H: 50S ribosomal protein L34 (From Topology) | T: 50S ribosomal protein L34 | F: Ribosomal_L34 | ECOD (1.6) |
B [auth C] | Ribosomal_L2_1 | e6pvkC1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_L2_1 | ECOD (1.6) |
B [auth C] | Ribosomal_L2_C_2 | e6pvkC2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L2_C_2 | ECOD (1.6) |
C [auth D] | Ribosomal_L3 | e6pvkD1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L3 | ECOD (1.6) |
F [auth K] | Ribosomal_L14 | e6pvkK1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: Ribosomal_L14 | ECOD (1.6) |
H [auth N] | Ribosomal_L17_1 | e6pvkN1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Prokaryotic ribosomal protein L17 (From Topology) | T: Prokaryotic ribosomal protein L17 | F: Ribosomal_L17_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
L [auth S] | 3.90.470.10 | Alpha Beta | Alpha-Beta Complex | Ribosomal Protein L22 | Chain A | CATH (utative) |
M [auth T] | 3.30.70.330 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | RRM (RNA recognition motif) domain | CATH (utative) |
B [auth C] | 2.40.50.140 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | Nucleic acid-binding proteins | CATH (utative) |
C [auth D] | 3.30.160.810 | Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | CATH (utative) | |
F [auth K] | 2.40.150.20 | Mainly Beta | Beta Barrel | Ribosomal Protein L14 | Ribosomal protein L14/L23 | CATH (utative) |
H [auth N] | 3.90.1030.10 | Alpha Beta | Alpha-Beta Complex | 50s Ribosomal Protein L17 | Chain: A, | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
E [auth J] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
G [auth L] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. | Domain |
I [auth P] | PF01245 | Ribosomal protein L19 (Ribosomal_L19) | Ribosomal protein L19 | - | Family |
L [auth S] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
J [auth Q] | PF00453 | Ribosomal protein L20 (Ribosomal_L20) | Ribosomal protein L20 | - | Family |
M [auth T] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
N [auth U] | PF17136 | Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24) | Ribosomal proteins 50S L24/mitochondrial 39S L24 | - | Family |
N [auth U] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
P [auth Y] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
B [auth C] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | Domain | |
B [auth C] | PF00181 | Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N) | Ribosomal Proteins L2, RNA binding N-terminal domain | Domain | |
C [auth D] | PF00297 | Ribosomal protein L3 (Ribosomal_L3) | Ribosomal protein L3 | - | Family |
H [auth N] | PF01196 | Ribosomal protein L17 (Ribosomal_L17) | Ribosomal protein L17 | - | Family |