6KHP
Crystal structure of Oryza sativa TDC with PLP and tryptamine
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d6khpb_ | Alpha and beta proteins (a/b) | PLP-dependent transferase-like | PLP-dependent transferases | automated matches | automated matches | Rice (Oryza sativa Japonica Group ) [TaxId: 39947 ], | SCOPe (2.08) |
A | d6khpa_ | Alpha and beta proteins (a/b) | PLP-dependent transferase-like | PLP-dependent transferases | automated matches | automated matches | Rice (Oryza sativa Japonica Group ) [TaxId: 39947 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | PLP-dependent transferases | 8099860 | 3000954 | SCOP2B (2022-06-29) |
A | SCOP2 Family | Pyridoxal-dependent decarboxylase | 8099859 | 4003328 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | PLP-dependent transferases | 8099860 | 3000954 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | Pyridoxal_deC | e6khpB1 | A: a+b two layers | X: C-terminal domain in some PLP-dependent transferases (From Topology) | H: C-terminal domain in some PLP-dependent transferases (From Topology) | T: C-terminal domain in some PLP-dependent transferases | F: Pyridoxal_deC | ECOD (1.6) |
B | Aminotran_5_N | e6khpB2 | A: a/b three-layered sandwiches | X: PLP-dependent transferases (From Topology) | H: PLP-dependent transferases (From Topology) | T: PLP-dependent transferases | F: Aminotran_5_N | ECOD (1.6) |
A | Pyridoxal_deC | e6khpA2 | A: a+b two layers | X: C-terminal domain in some PLP-dependent transferases (From Topology) | H: C-terminal domain in some PLP-dependent transferases (From Topology) | T: C-terminal domain in some PLP-dependent transferases | F: Pyridoxal_deC | ECOD (1.6) |
A | Aminotran_5_N | e6khpA1 | A: a/b three-layered sandwiches | X: PLP-dependent transferases (From Topology) | H: PLP-dependent transferases (From Topology) | T: PLP-dependent transferases | F: Aminotran_5_N | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00282 | Pyridoxal-dependent decarboxylase conserved domain (Pyridoxal_deC) | Pyridoxal-dependent decarboxylase conserved domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR015424 | Pyridoxal phosphate-dependent transferase | Homologous Superfamily | |
IPR015421 | Pyridoxal phosphate-dependent transferase, major domain | Homologous Superfamily | |
IPR010977 | Aromatic-L-amino-acid decarboxylase | Family | |
IPR015422 | Pyridoxal phosphate-dependent transferase, small domain | Homologous Superfamily | |
IPR002129 | Pyridoxal phosphate-dependent decarboxylase | Family | |
IPR021115 | Pyridoxal-phosphate binding site | Binding Site |