8V5P

Crystal Structure of the C-terminal domain of the VZV gE ectodomain in complex with the Fab of human antibody 5A2

External Resource: Annotation


SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
B [auth H],
E,
H [auth J],
K [auth F]		Heavy ChainIGHV4 -envelope glycoprotein eSAbDab (2024-12-13)
C [auth L],
F [auth Y],
I [auth X],
L [auth I]		Light ChainIGKV1 Kappaenvelope glycoprotein eSAbDab (2024-12-13)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
D,
G,
J [auth C]		PF02480Alphaherpesvirus glycoprotein E (Herpes_gE)Alphaherpesvirus glycoprotein EGlycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI) (Pfam:PF01688), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [1]. This entry represe ...Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI) (Pfam:PF01688), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [1]. This entry represents the Ig-like domain of gE, identified as the Fc-binding domain [2].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
D,
G,
J [auth C]		Envelope glycoprotein E- -
B [auth H],
E,
H [auth J],
K [auth F]		5A2 Fab heavy chain---
C [auth L],
F [auth Y],
I [auth X],
L [auth I]		5A2 Fab Light Chain---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
D,
G,
J [auth C]		IPR013783Immunoglobulin-like foldHomologous Superfamily
A,
D,
G,
J [auth C]		IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
A,
D,
G,
J [auth C]		IPR046463Envelope glycoprotein E, N-terminalDomain
A,
D,
G,
J [auth C]		IPR003404Envelope glycoprotein E, Fc-binding domainDomain