X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1A0ZBV1M STRUCTURE, PDB ENTRY 1A0Z.

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1710.5% PEG 6000 10 MM POTASSIUM PHOSPHATE PH 7.0 100 MM POTASSIUM CHLORIDE 3 MM SODIUM DITHIONITE
Crystal Properties
Matthews coefficientSolvent content
2.3247

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 84.1α = 90
b = 112β = 90
c = 63.8γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray295AREA DETECTORXUONG-HAMLIN MULTIWIRE1995-10-31M
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RUH2R

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
122597.10.0690.0698.65.940226
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
22.1586.30.1910.1912.243

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONISOMORPHOUS WITH DEOXYHEMOGLOBIN ATHROUGHOUTBV1M STRUCTURE, PDB ENTRY 1A0Z.2824464134844347097.10.1690.223RANDOM21.9
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor32.4
p_staggered_tor20.3
p_scangle_it12.3
p_scbond_it8.8
p_mcangle_it3.5
p_planar_tor2.8
p_mcbond_it2.6
p_xyhbond_nbd0.175
p_singtor_nbd0.172
p_multtor_nbd0.168
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor32.4
p_staggered_tor20.3
p_scangle_it12.3
p_scbond_it8.8
p_mcangle_it3.5
p_planar_tor2.8
p_mcbond_it2.6
p_xyhbond_nbd0.175
p_singtor_nbd0.172
p_multtor_nbd0.168
p_chiral_restr0.143
p_planar_d0.049
p_angle_d0.03
p_bond_d0.013
p_plane_restr0.013
p_angle_deg
p_hb_or_metal_coord
p_xhyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4382
Nucleic Acid Atoms
Solvent Atoms216
Heterogen Atoms172

Software

Software
Software NamePurpose
PROLSQrefinement
SDMSdata reduction
SDMSdata scaling