1B2K | pdb_00001b2k

Structural effects of monovalent anions on polymorphic lysozyme crystals


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 193L 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
14.5291THE ISOIONIC PROTEIN HEWL WAS ACIDIFIED BY ADDING OF HI UNTIL THE PH 4.5 WAS REACHED AT 291K WERE 25 MG/ML OF PROTEIN AND 0.07 M OF NAI VERSUS A WELL CONTAINING 0.14 M OF NAI AT PH4.5
Crystal Properties
Matthews coefficientSolvent content
1.833

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 27.73α = 90
b = 62.79β = 90.1
c = 59.84γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray293IMAGE PLATEMARRESEARCH1992-12-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONLURE BEAMLINE DW32LUREDW32

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.613.396.70.0955.23.12615215.2
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.61.6495.60.541.32.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT193L1.6826000261296.60.1980.1980.180.237RANDOM16.4
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
x_dihedral_angle_d25.27
x_scangle_it3.7
x_scbond_it3.21
x_mcangle_it2.73
x_mcbond_it2.5
x_angle_deg1.16
x_improper_angle_d0.59
x_bond_d0.004
x_bond_d_na
x_bond_d_prot
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2014
Nucleic Acid Atoms
Solvent Atoms291
Heterogen Atoms19

Software

Software
Software NamePurpose
MOSFLMdata reduction
Agrovatadata reduction
CCP4data reduction
AMoREphasing
X-PLORrefinement
Agrovatadata scaling