1C06 | pdb_00001c06

SOLUTION STRUCTURE OF RIBOSOMAL PROTEIN S4 DELTA 41, REFINED WITH DIPOLAR COUPLINGS (ENSEMBLE OF 16 STRUCTURES)

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	3D_15N-SEPARATED_NOESY	1.1 MM S4 DELTA 41, U-15N,13C; 20 MM D4-ACETATE PH 5.4, 250 MM KCL, 0.1 MM SODIUM AZIDE	94% H2O, 6% D2O	250 mM KCL	5.4	AMBIENT	310
2	3D_13C-SEPARATED_NOESY	0.45 MM S4 DELTA 41, U-15N,13C; 20 MM D4-ACETATE PH 5.4, 250 MM KCL	99.9% D2O	250 mM KCL	5.4	AMBIENT	310
3	4D_13C-SEPARATED_NOESY	0.45 MM S4 DELTA 41, U-15N,13C; 20 MM D4-ACETATE PH 5.4, 250 MM KCL	99.9% D2O	250 mM KCL	5.4	AMBIENT	310
4	HNHA	1.1 MM S4 DELTA 41, U-15N,13C; 20 MM D4-ACETATE PH 5.4, 250 MM KCL, 0.1 MM SODIUM AZIDE	94% H2O, 6% D2O	250 mM KCL	5.4	AMBIENT	310
5	IPAP 15N HSQC	0.10 MM S4 DELTA 41, U-15N; 7 MM D4-ACETATE PH 5.4, 7 MM KH2PO4 PH 6.5, 80 MM KCL, 5% W/V DMPC:DHPC (3:1)	93% H2O/7% D2O	80 mM KCL	6.0	AMBIENT	310

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	DMX	750
2	Bruker	DMX	500

NMR Refinement
Method	Details	Software
HYBRID DGSA PROTOCOL WITHOUT THE DIPOLAR COUPLING RESTRAINTS FOLLOWED BY ADDITIONAL SA WITH THE DIPOLAR COUPLING RESTRAINTS ADDED	SUMMARY OF RESTRAINTS: 2170 NOE, 86 HYDROGEN BOND, 114 DIHEDRAL ANGLE, AND 101 DIPOLAR COUPLINGS	XwinNMR

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	50
Conformers Submitted Total Number	16
Representative Model	1 (lowest energy)

Additional NMR Experimental Information
Details	THESE STRUCTURES WERE DETERMINED WITH NOE RESTRAINTS FROM MULTIDIMENSIONAL HETERONUCLEAR EXPERIMENTS, DIHEDRAL ANGLE RESTRAINTS BASED ON MEASUREMENTS OF SCALAR COUPLING CONSTANTS, AND DIPOLAR COUPLING RESTRAINTS MEASURED ON SAMPLES IN PARTIALLY ALIGNED PHASES. THE STRUCTURES ARE ARRANGED IN ORDER FROM LOWEST TO HIGHEST X-PLOR ENERGY.

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	structure solution	XwinNMR	2.5	BRUKER
2	structure solution	NMRPipe	1.7	DELAGLIO
3	structure solution	PIPP	4.2.8	GARRETT
4	refinement	X-PLOR	3.8, 4.0	BRUNGER

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.