X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.3293Malonate, pH 7.3, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.6453.45

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 91.094α = 90
b = 159.815β = 90
c = 162.877γ = 90
Symmetry
Space GroupF 2 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMAR scanner 345 mm plate2001-05-07MSAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-40.934ESRFID14-4

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
124592.70.07813.85.7370432
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.152.70.342.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.0225351513515118511000.248040.245450.29867RANDOM21.01
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.9-0.57-0.33
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg7.321
r_scangle_it7.032
r_scbond_it4.553
r_angle_refined_deg3.021
r_mcangle_it2.763
r_mcbond_it1.776
r_angle_other_deg1.695
r_symmetry_hbond_refined0.313
r_symmetry_vdw_other0.275
r_symmetry_vdw_refined0.264
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg7.321
r_scangle_it7.032
r_scbond_it4.553
r_angle_refined_deg3.021
r_mcangle_it2.763
r_mcbond_it1.776
r_angle_other_deg1.695
r_symmetry_hbond_refined0.313
r_symmetry_vdw_other0.275
r_symmetry_vdw_refined0.264
r_nbd_other0.252
r_nbd_refined0.247
r_xyhbond_nbd_refined0.211
r_chiral_restr0.206
r_nbtor_other0.11
r_bond_refined_d0.046
r_gen_planes_refined0.015
r_gen_planes_other0.011
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3796
Nucleic Acid Atoms
Solvent Atoms248
Heterogen Atoms14

Software

Software
Software NamePurpose
REFMACrefinement
MAR345data collection
XDSdata scaling
SHARPphasing