1SW2

Crystal structure of ProX from Archeoglobus fulgidus in complex with glycine betaine


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1SW1 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8291PEG 1500, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.0439.76

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 75.9α = 90
b = 75.9β = 90
c = 88.4γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2002-10-25MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA0.9774SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.15099.80.10810.815622156222240.1
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.21000.5473.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1SW12.150156221484977199.790.203150.203150.200910.2487RANDOM36.106
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.041.04-2.08
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.561
r_scangle_it3.448
r_scbond_it2.033
r_mcangle_it1.452
r_angle_refined_deg1.429
r_angle_other_deg0.853
r_mcbond_it0.778
r_symmetry_hbond_refined0.336
r_symmetry_vdw_other0.24
r_nbd_other0.229
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.561
r_scangle_it3.448
r_scbond_it2.033
r_mcangle_it1.452
r_angle_refined_deg1.429
r_angle_other_deg0.853
r_mcbond_it0.778
r_symmetry_hbond_refined0.336
r_symmetry_vdw_other0.24
r_nbd_other0.229
r_symmetry_vdw_refined0.212
r_nbd_refined0.211
r_xyhbond_nbd_refined0.166
r_chiral_restr0.092
r_nbtor_other0.087
r_bond_refined_d0.014
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2161
Nucleic Acid Atoms
Solvent Atoms46
Heterogen Atoms8

Software

Software
Software NamePurpose
REFMACrefinement
MAR345data collection
XDSdata scaling
MOLREPphasing