X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.129320% PEG 5000, 0.1M BisTris pH 6.5, 0.1M AmSulfate, 5% Glycerol; Cryo 30% Glycerol, 20% PEG 5000, 0.1M BisTris pH 6.5, 0.1M AmSulfate, pH 6.1, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.3547.29

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 48.98α = 90
b = 79.378β = 90
c = 86.685γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHVertical and Horizontal focusing mirrors2004-02-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 31-ID.9790APS31-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8201000.1511.078.73185831858-316.4
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.81.861000.28383113

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Cut-off Sigma (I)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.820-33180131801160499.860.171820.171820.170150.20314RANDOM14.793
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.521.13-0.6
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.008
r_dihedral_angle_4_deg14.639
r_dihedral_angle_3_deg12.693
r_dihedral_angle_1_deg5.188
r_scangle_it3.666
r_scbond_it2.584
r_mcangle_it1.264
r_angle_refined_deg1.239
r_mcbond_it1.219
r_angle_other_deg0.807
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.008
r_dihedral_angle_4_deg14.639
r_dihedral_angle_3_deg12.693
r_dihedral_angle_1_deg5.188
r_scangle_it3.666
r_scbond_it2.584
r_mcangle_it1.264
r_angle_refined_deg1.239
r_mcbond_it1.219
r_angle_other_deg0.807
r_mcbond_other0.204
r_nbd_refined0.202
r_nbd_other0.19
r_symmetry_vdw_other0.184
r_symmetry_vdw_refined0.14
r_symmetry_hbond_refined0.129
r_xyhbond_nbd_refined0.122
r_nbtor_other0.084
r_chiral_restr0.08
r_xyhbond_nbd_other0.014
r_bond_refined_d0.012
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2559
Nucleic Acid Atoms
Solvent Atoms277
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
SOLVEphasing