1X8H

The Mono-Zinc Carbapenemase CphA (N220G mutant) Shows a Zn(II)- NH2 ARG Coordination


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.5280PEG, AS, pH 6.50, VAPOR DIFFUSION, HANGING DROP, temperature 280K
Crystal Properties
Matthews coefficientSolvent content
2.551

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 42.683α = 90
b = 101.286β = 90
c = 117.82γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2003-06-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE BM30AESRFBM30A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.65093.10.0580.0588.75.832222
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.61.6993.10.070.078.13.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSIRASTHROUGHOUT1.65030092159892.720.1530.153970.152590.17957RANDOM11.165
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.220.45-0.23
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free8.379
r_dihedral_angle_1_deg6.415
r_sphericity_bonded4.173
r_scangle_it3.357
r_scbond_it2.076
r_angle_refined_deg1.364
r_mcangle_it1.299
r_angle_other_deg1.042
r_mcbond_it0.735
r_nbd_refined0.413
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free8.379
r_dihedral_angle_1_deg6.415
r_sphericity_bonded4.173
r_scangle_it3.357
r_scbond_it2.076
r_angle_refined_deg1.364
r_mcangle_it1.299
r_angle_other_deg1.042
r_mcbond_it0.735
r_nbd_refined0.413
r_symmetry_vdw_other0.324
r_nbd_other0.243
r_xyhbond_nbd_refined0.173
r_symmetry_vdw_refined0.105
r_symmetry_hbond_refined0.104
r_chiral_restr0.083
r_nbtor_other0.081
r_metal_ion_refined0.038
r_bond_refined_d0.011
r_gen_planes_other0.009
r_gen_planes_refined0.008
r_bond_other_d0.002
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_hbond_other
r_mcbond_other
r_rigid_bond_restr
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1772
Nucleic Acid Atoms
Solvent Atoms258
Heterogen Atoms32

Software

Software
Software NamePurpose
MOSFLMdata reduction
SCALAdata scaling
CCP4model building
REFMACrefinement
CCP4data scaling
CCP4phasing