X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP5.72900.5 ul protein 10 mg/ml, 5% DMSO, 2.5% glycerol, 250 mM NaCl, 10mM HEPES pH 7.5 0.5 ul crystallization buffer 18% PEG 1000, 50 mM MES pH 5.6, 50 mM K3PO4, pH 5.7, VAPOR DIFFUSION, SITTING DROP, temperature 290K
Crystal Properties
Matthews coefficientSolvent content
2.9458.18

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 147.438α = 90
b = 147.438β = 90
c = 147.438γ = 90
Symmetry
Space GroupI 4 3 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayCCDADSC QUANTUM 2102004-04-27MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL11-10.9794, 0.9793, 0.8919SSRLBL11-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.439.40.07520.82011010935
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.42.471000.91820.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT2.4139.40620135932698094.070.229690.224680.27567RANDOM63.738
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.727
r_dihedral_angle_3_deg21.361
r_dihedral_angle_4_deg20.481
r_dihedral_angle_1_deg7.557
r_scangle_it3.464
r_scbond_it2.251
r_angle_refined_deg1.97
r_mcangle_it1.582
r_mcbond_it0.936
r_nbtor_refined0.312
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.727
r_dihedral_angle_3_deg21.361
r_dihedral_angle_4_deg20.481
r_dihedral_angle_1_deg7.557
r_scangle_it3.464
r_scbond_it2.251
r_angle_refined_deg1.97
r_mcangle_it1.582
r_mcbond_it0.936
r_nbtor_refined0.312
r_nbd_refined0.243
r_symmetry_vdw_refined0.197
r_xyhbond_nbd_refined0.18
r_chiral_restr0.151
r_symmetry_hbond_refined0.13
r_bond_refined_d0.02
r_gen_planes_refined0.007
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1517
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
CNSrefinement
SOLVEphasing
DMphasing
SCALEPACKdata scaling