X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2HTEpdb entry 2HTE

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.629123% w/v PEG3350, 0.1M Ammonium Sulphate, 0.1M Bis-Tris, 15% glycerol, 1 mM AdoDATO (S-adenosyl-1,8-diamino-3-thiooctane), pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
3.3363.08

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 198.168α = 90
b = 134.685β = 95.44
c = 48.5γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMAR CCD 165 mm2006-08-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 17-BM1.00APS17-BM

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.715093.80.04525.73.7137061126855524.6
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.711.74510.3312.742.63482

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTpdb entry 2HTE1.7135.92122193645693.960.176240.175310.19384RANDOM25.045
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.13-0.150.070.03
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.383
r_dihedral_angle_4_deg20.337
r_dihedral_angle_3_deg13.125
r_dihedral_angle_1_deg6.542
r_scangle_it2.918
r_scbond_it1.967
r_angle_refined_deg1.323
r_mcangle_it1.252
r_mcbond_it0.809
r_nbtor_refined0.304
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.383
r_dihedral_angle_4_deg20.337
r_dihedral_angle_3_deg13.125
r_dihedral_angle_1_deg6.542
r_scangle_it2.918
r_scbond_it1.967
r_angle_refined_deg1.323
r_mcangle_it1.252
r_mcbond_it0.809
r_nbtor_refined0.304
r_nbd_refined0.197
r_symmetry_hbond_refined0.168
r_symmetry_vdw_refined0.13
r_chiral_restr0.098
r_xyhbond_nbd_refined0.094
r_bond_refined_d0.013
r_gen_planes_refined0.006
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6753
Nucleic Acid Atoms
Solvent Atoms571
Heterogen Atoms139

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling