2VR6

Crystal Structure of G85R ALS mutant of Human Cu,Zn Superoxide Dismutase (CuZnSOD) at 1.3 A resolution


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1C9SPDB ENTRY 1C9S

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1720% P3350 0.2 M NA THYOCYANATE, pH 7.0
Crystal Properties
Matthews coefficientSolvent content
2.2735

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 35.296α = 90
b = 73.746β = 90
c = 111.424γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHMIRRORS2004-05-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSRS BEAMLINE PX9.6SRSPX9.6

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.33096.60.0721.83.57021011.05
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.31.35860.581.72.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1C9S1.32066304353296.40.1350.1320.182RANDOM10.9
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.03-0.040.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg13.374
r_dihedral_angle_4_deg9.083
r_dihedral_angle_1_deg6.857
r_scangle_it4.846
r_scbond_it3.494
r_mcangle_it2.734
r_angle_other_deg2.29
r_mcbond_it1.923
r_angle_refined_deg1.903
r_symmetry_vdw_refined0.368
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg13.374
r_dihedral_angle_4_deg9.083
r_dihedral_angle_1_deg6.857
r_scangle_it4.846
r_scbond_it3.494
r_mcangle_it2.734
r_angle_other_deg2.29
r_mcbond_it1.923
r_angle_refined_deg1.903
r_symmetry_vdw_refined0.368
r_symmetry_vdw_other0.308
r_nbd_refined0.255
r_symmetry_hbond_refined0.243
r_xyhbond_nbd_refined0.241
r_nbd_other0.204
r_chiral_restr0.14
r_nbtor_other0.098
r_bond_refined_d0.019
r_gen_planes_refined0.01
r_gen_planes_other0.003
r_bond_other_d0.002
r_dihedral_angle_2_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2234
Nucleic Acid Atoms
Solvent Atoms779
Heterogen Atoms19

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing