X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2G47PDB ENTRY 2G47

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17pH 7
Crystal Properties
Matthews coefficientSolvent content
3.8767.93

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 263.169α = 90
b = 263.169β = 90
c = 90.875γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray287CCDADSC CCD2007-04-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-IDAPS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.85099.60.1319.86.5979802
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.82.9198.30.533.65.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2G472.829.8583937442299.70.1720.170.22RANDOM40.55
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.020.010.02-0.03
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.55
r_dihedral_angle_4_deg22.714
r_dihedral_angle_3_deg21.285
r_dihedral_angle_1_deg7.871
r_scangle_it5.857
r_scbond_it3.688
r_angle_refined_deg2.515
r_mcangle_it2.092
r_mcbond_it1.285
r_nbtor_refined0.339
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.55
r_dihedral_angle_4_deg22.714
r_dihedral_angle_3_deg21.285
r_dihedral_angle_1_deg7.871
r_scangle_it5.857
r_scbond_it3.688
r_angle_refined_deg2.515
r_mcangle_it2.092
r_mcbond_it1.285
r_nbtor_refined0.339
r_symmetry_vdw_refined0.28
r_nbd_refined0.264
r_symmetry_hbond_refined0.216
r_xyhbond_nbd_refined0.203
r_chiral_restr0.155
r_bond_refined_d0.03
r_gen_planes_refined0.01
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms16187
Nucleic Acid Atoms
Solvent Atoms360
Heterogen Atoms50

Software

Software
Software NamePurpose
REFMACrefinement
HKL-3000data reduction
SCALEPACKdata scaling
PHASERphasing