2PC2

Lysozyme Cocrystallized with Tris-dipicolinate Eu complex


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.12930.3M NaCl, 0.1M MES, pH 5.1, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
1.9637.25

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 50.266α = 90
b = 33.779β = 108.22
c = 69.683γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCHMULTILAYER2005-05-20MSINGLE WAVELENGTH
21
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODEENRAF-NONIUS FR5911.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.53819.03598.20.0950.0953.87.91639810.4
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.5381.6392.70.1020.1025.85.22234

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.53818.981639683298.030.140.140.1380.167RANDOM10.09
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.240.11-0.08-0.09
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.67
r_dihedral_angle_3_deg11.867
r_dihedral_angle_4_deg9.844
r_sphericity_free7.896
r_dihedral_angle_1_deg5.876
r_angle_other_deg4.073
r_scangle_it2.367
r_scbond_it1.663
r_angle_refined_deg1.52
r_mcangle_it1.044
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.67
r_dihedral_angle_3_deg11.867
r_dihedral_angle_4_deg9.844
r_sphericity_free7.896
r_dihedral_angle_1_deg5.876
r_angle_other_deg4.073
r_scangle_it2.367
r_scbond_it1.663
r_angle_refined_deg1.52
r_mcangle_it1.044
r_mcbond_it0.581
r_symmetry_vdw_other0.301
r_nbd_other0.236
r_nbd_refined0.227
r_nbtor_refined0.202
r_symmetry_hbond_refined0.195
r_xyhbond_nbd_refined0.158
r_symmetry_vdw_refined0.142
r_nbtor_other0.103
r_chiral_restr0.08
r_metal_ion_refined0.04
r_bond_refined_d0.009
r_gen_planes_other0.006
r_gen_planes_refined0.005
r_bond_other_d
r_mcbond_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1001
Nucleic Acid Atoms
Solvent Atoms198
Heterogen Atoms162

Software

Software
Software NamePurpose
SCALAdata scaling
SHARPphasing
SOLOMONphasing
REFMACrefinement
PDB_EXTRACTdata extraction
MAR345data collection
XDSdata reduction