X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.5289PEG3350, (NH4)2SO4, Bis-Tris, sodium dithionite, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties
Matthews coefficientSolvent content
1.9838.02

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 111.75α = 90
b = 74.66β = 111.28
c = 70.65γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCHOsmic mirrors2007-05-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODEENRAF-NONIUS FR5711.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.427.997.80.06615.72104078-314.233
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.41.4585.80.1883.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT1.427.9104078522997.930.1580.1570.183RANDOM8.523
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.36-0.270.080.08
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.545
r_dihedral_angle_4_deg18.661
r_dihedral_angle_3_deg12.029
r_dihedral_angle_1_deg5.75
r_sphericity_bonded2.765
r_scangle_it2.269
r_angle_refined_deg1.91
r_rigid_bond_restr1.855
r_angle_other_deg1.741
r_scbond_it1.645
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.545
r_dihedral_angle_4_deg18.661
r_dihedral_angle_3_deg12.029
r_dihedral_angle_1_deg5.75
r_sphericity_bonded2.765
r_scangle_it2.269
r_angle_refined_deg1.91
r_rigid_bond_restr1.855
r_angle_other_deg1.741
r_scbond_it1.645
r_mcangle_it0.781
r_mcbond_it0.686
r_symmetry_vdw_other0.253
r_nbd_refined0.211
r_nbd_other0.193
r_nbtor_refined0.169
r_symmetry_vdw_refined0.161
r_symmetry_hbond_refined0.156
r_metal_ion_refined0.149
r_xyhbond_nbd_refined0.132
r_mcbond_other0.126
r_chiral_restr0.096
r_nbtor_other0.087
r_bond_other_d0.018
r_bond_refined_d0.016
r_xyhbond_nbd_other0.007
r_gen_planes_refined0.004
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4750
Nucleic Acid Atoms
Solvent Atoms884
Heterogen Atoms22

Software

Software
Software NamePurpose
XSCALEdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
MAR345dtbdata collection
CNSphasing