X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.42982 M Ammonium sulfate, 100 mM Tris HCl, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
Crystal Properties
Matthews coefficientSolvent content
1.935.22

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 36.418α = 90
b = 56.324β = 90
c = 58.774γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDSBC-32007-03-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-BM0.97921APS19-BM

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.440.6699.10.04610.37.62433524335
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.41.4595.60.218.27.12293

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT1.440.662429024290123699.380.1530.1530.1510.18RANDOM11.118
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.140.130.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.966
r_dihedral_angle_4_deg19.352
r_dihedral_angle_3_deg10.074
r_dihedral_angle_1_deg5.986
r_scangle_it2.667
r_sphericity_free2.213
r_scbond_it2.05
r_sphericity_bonded1.672
r_rigid_bond_restr1.59
r_mcangle_it1.1
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.966
r_dihedral_angle_4_deg19.352
r_dihedral_angle_3_deg10.074
r_dihedral_angle_1_deg5.986
r_scangle_it2.667
r_sphericity_free2.213
r_scbond_it2.05
r_sphericity_bonded1.672
r_rigid_bond_restr1.59
r_mcangle_it1.1
r_angle_refined_deg1.053
r_mcbond_it0.651
r_nbtor_refined0.299
r_nbd_refined0.191
r_symmetry_hbond_refined0.183
r_symmetry_vdw_refined0.173
r_xyhbond_nbd_refined0.096
r_chiral_restr0.065
r_bond_refined_d0.006
r_gen_planes_refined0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1075
Nucleic Acid Atoms
Solvent Atoms231
Heterogen Atoms13

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
EPICS-baseddata collection