3BU9

Selenomethionine derivative of monomine L57,63,87,146M mutant


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.42982M ammonium sulfate, 100 mM Tris HCl, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
Crystal Properties
Matthews coefficientSolvent content
1.8633.95

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 36.281α = 90
b = 56.547β = 90
c = 58.747γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCDSi(111)2007-03-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-BM0.97918APS19-BM

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.440.761000.0511.23.94597445974
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.41.451000.3113.73.54575

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.440.762440724407124699.80.1790.1790.1770.215RANDOM12.226
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.090.23-0.14
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.965
r_dihedral_angle_4_deg16.421
r_dihedral_angle_3_deg12.665
r_dihedral_angle_1_deg5.898
r_sphericity_free4.025
r_scangle_it3.464
r_scbond_it2.821
r_sphericity_bonded2.612
r_rigid_bond_restr2.15
r_mcangle_it1.672
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.965
r_dihedral_angle_4_deg16.421
r_dihedral_angle_3_deg12.665
r_dihedral_angle_1_deg5.898
r_sphericity_free4.025
r_scangle_it3.464
r_scbond_it2.821
r_sphericity_bonded2.612
r_rigid_bond_restr2.15
r_mcangle_it1.672
r_angle_refined_deg1.237
r_mcbond_it1.058
r_nbtor_refined0.301
r_symmetry_hbond_refined0.211
r_nbd_refined0.193
r_symmetry_vdw_refined0.184
r_xyhbond_nbd_refined0.095
r_chiral_restr0.082
r_bond_refined_d0.011
r_gen_planes_refined0.006
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1091
Nucleic Acid Atoms
Solvent Atoms156
Heterogen Atoms

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
MLPHAREphasing
DMphasing
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-3000data collection