X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5293MEPEG 5000, NH4SO4, Na Acetate, pH 5.0, vapor diffusion, hanging drop, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.5151.08

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 119.153α = 90
b = 119.153β = 90
c = 84.412γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray93CCDMARMOSAIC 225 mm CCD2007-03-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 21-ID-D0.9804APS21-ID-D

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.655097.20.07413.625.917746
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.652.7481.30.38214.51444

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.6545.041771490197.260.2170.2140.26RANDOM59.516
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.381.38-2.76
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.293
r_dihedral_angle_3_deg20.311
r_dihedral_angle_4_deg19.836
r_dihedral_angle_1_deg5.866
r_scangle_it1.569
r_angle_refined_deg1.33
r_scbond_it0.978
r_mcangle_it0.7
r_mcbond_it0.405
r_nbtor_refined0.302
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.293
r_dihedral_angle_3_deg20.311
r_dihedral_angle_4_deg19.836
r_dihedral_angle_1_deg5.866
r_scangle_it1.569
r_angle_refined_deg1.33
r_scbond_it0.978
r_mcangle_it0.7
r_mcbond_it0.405
r_nbtor_refined0.302
r_nbd_refined0.219
r_symmetry_vdw_refined0.219
r_symmetry_hbond_refined0.147
r_xyhbond_nbd_refined0.14
r_chiral_restr0.094
r_bond_refined_d0.011
r_gen_planes_refined0.003
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3709
Nucleic Acid Atoms
Solvent Atoms6
Heterogen Atoms52

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
SHARPphasing
DMphasing
REFMACrefinement
PDB_EXTRACTdata extraction