X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.529318-22% PEG 8000, 50 mM Tris-HCl, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.0740.46

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 58.143α = 90
b = 77.188β = 90
c = 140.405γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 300 mm CCD2006-08-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 22-ID1.00APS22-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
125096.60.07517.54.54215639867
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.07950.4233.24.14065

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT22539867212996.60.203020.200490.25082RANDOM42.892
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.92.5-1.59
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.673
r_dihedral_angle_4_deg19.592
r_dihedral_angle_3_deg16.483
r_dihedral_angle_1_deg4.599
r_scangle_it2.869
r_scbond_it1.78
r_angle_refined_deg1.211
r_mcangle_it1.09
r_mcbond_it0.686
r_nbtor_refined0.3
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.673
r_dihedral_angle_4_deg19.592
r_dihedral_angle_3_deg16.483
r_dihedral_angle_1_deg4.599
r_scangle_it2.869
r_scbond_it1.78
r_angle_refined_deg1.211
r_mcangle_it1.09
r_mcbond_it0.686
r_nbtor_refined0.3
r_symmetry_vdw_refined0.21
r_nbd_refined0.209
r_xyhbond_nbd_refined0.162
r_symmetry_hbond_refined0.138
r_chiral_restr0.081
r_metal_ion_refined0.051
r_bond_refined_d0.012
r_gen_planes_refined0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4770
Nucleic Acid Atoms
Solvent Atoms280
Heterogen Atoms6

Software

Software
Software NamePurpose
REFMACrefinement
MAR345dtbdata collection
HKL-2000data reduction
HKL-2000data scaling
SHARPphasing