3CX9

Crystal Structure of Human serum albumin complexed with Myristic acid and lysophosphatidylethanolamine


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1N5UPDB ENTRY 1N5U

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.529835% PEG 3350, 85mM potassium phosphate, 5mM sodium azide, pH7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298.0K
Crystal Properties
Matthews coefficientSolvent content
2.550.87

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 183.888α = 90
b = 39.015β = 104.69
c = 95.633γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDBRUKER SMART 20002007-01-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 22-ID1.0APS22-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.85079.10.057215244
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.82.87385.70.3561.91095

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1N5U2.8501524481395.670.22340.219490.29527RANDOM56.231
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.640.582.15-3.49
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.725
r_dihedral_angle_3_deg20.429
r_dihedral_angle_4_deg16.119
r_dihedral_angle_1_deg6.392
r_scangle_it2.174
r_angle_refined_deg1.521
r_scbond_it1.4
r_angle_other_deg1.049
r_mcangle_it0.823
r_mcbond_it0.524
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.725
r_dihedral_angle_3_deg20.429
r_dihedral_angle_4_deg16.119
r_dihedral_angle_1_deg6.392
r_scangle_it2.174
r_angle_refined_deg1.521
r_scbond_it1.4
r_angle_other_deg1.049
r_mcangle_it0.823
r_mcbond_it0.524
r_symmetry_vdw_other0.3
r_nbd_refined0.241
r_nbd_other0.201
r_nbtor_refined0.193
r_xyhbond_nbd_refined0.156
r_chiral_restr0.131
r_symmetry_vdw_refined0.122
r_nbtor_other0.092
r_mcbond_other0.091
r_bond_refined_d0.014
r_gen_planes_refined0.004
r_bond_other_d0.002
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4493
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms98

Software

Software
Software NamePurpose
REFMACrefinement
PROTEUM PLUSdata collection
HKL-2000data reduction
HKL-2000data scaling
CNSphasing