3ENG

STRUCTURE OF ENDOGLUCANASE V CELLOBIOSE COMPLEX


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2ENGPDB ENTRY 2ENG

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1810MG/ML ENZYME IN 20MM TRIS-HCL BUFFER PH 8.0. PRECIPITANT 18%(W/V) PEG 8K. CO-CRYSTALLISED WITH 5MM CELLOBIOSE
Crystal Properties
Matthews coefficientSolvent content
1.9135.62

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 41.75α = 90
b = 56.18β = 93.4
c = 37.37γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray293IMAGE PLATERIGAKU1993-11-09M
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RUH2R

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.92096.30.07116.53.413151-999
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.9278.30.1187.442.3

Refinement

Statistics
Diffraction IDStructure Solution MethodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTPDB ENTRY 2ENG1.910130700.145
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor24.6
p_staggered_tor16.7
p_scangle_it4.413
p_planar_tor3.8
p_scbond_it2.945
p_mcangle_it2.174
p_mcbond_it1.621
p_multtor_nbd0.255
p_singtor_nbd0.161
p_chiral_restr0.119
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor24.6
p_staggered_tor16.7
p_scangle_it4.413
p_planar_tor3.8
p_scbond_it2.945
p_mcangle_it2.174
p_mcbond_it1.621
p_multtor_nbd0.255
p_singtor_nbd0.161
p_chiral_restr0.119
p_planar_d0.032
p_angle_d0.028
p_bond_d0.009
p_plane_restr0.008
p_angle_deg
p_hb_or_metal_coord
p_xhyhbond_nbd
p_xyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1605
Nucleic Acid Atoms
Solvent Atoms152
Heterogen Atoms23

Software

Software
Software NamePurpose
DENZOdata reduction
ROTAVATAdata reduction
AMoREphasing
REFMACrefinement
CCP4data scaling