X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7293AMMONIUM SULFATE, CADMIUM SLFATE, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
3.1360.72

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 181.443α = 90
b = 181.443β = 90
c = 181.443γ = 90
Symmetry
Space GroupF 4 3 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRIGAKU JUPITER 2102009-02-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSPRING-8 BEAMLINE BL38B11.0SPring-8BL38B1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.735027184

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.7337.0427176136499.990.1990.19810.2168RANDOM21.7254
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.303
r_dihedral_angle_4_deg18.07
r_dihedral_angle_3_deg14.04
r_dihedral_angle_1_deg5.818
r_scangle_it4.018
r_scbond_it2.487
r_mcangle_it1.522
r_angle_refined_deg1.265
r_mcbond_it0.939
r_nbtor_refined0.304
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.303
r_dihedral_angle_4_deg18.07
r_dihedral_angle_3_deg14.04
r_dihedral_angle_1_deg5.818
r_scangle_it4.018
r_scbond_it2.487
r_mcangle_it1.522
r_angle_refined_deg1.265
r_mcbond_it0.939
r_nbtor_refined0.304
r_symmetry_hbond_refined0.228
r_nbd_refined0.214
r_symmetry_vdw_refined0.214
r_xyhbond_nbd_refined0.139
r_metal_ion_refined0.135
r_symmetry_metal_ion_refined0.13
r_chiral_restr0.086
r_bond_refined_d0.011
r_gen_planes_refined0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1379
Nucleic Acid Atoms
Solvent Atoms178
Heterogen Atoms41

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
HKL-2000data scaling