X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6293100mM MES, 30% PEG3350, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
1.7830.86

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 127.157α = 90
b = 29.359β = 112.47
c = 140.689γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRAYONIX MX-225MSINGLE WAVELENGTH
21x-ray100CCDRAYONIX MX-225MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSPRING-8 BEAMLINE BL44XU0.9SPring-8BL44XU
2SYNCHROTRONSPRING-8 BEAMLINE BL38B10.9SPring-8BL38B1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1,22.1450900.0637.73.62449411

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.1529.8524208122089.780.22140.21760.2912RANDOM29.0587
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.11-0.020.050.04
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.712
r_dihedral_angle_4_deg19.039
r_dihedral_angle_3_deg17.56
r_dihedral_angle_1_deg6.536
r_scangle_it3.855
r_scbond_it2.555
r_angle_refined_deg1.821
r_mcangle_it1.677
r_mcbond_it0.917
r_chiral_restr0.111
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.712
r_dihedral_angle_4_deg19.039
r_dihedral_angle_3_deg17.56
r_dihedral_angle_1_deg6.536
r_scangle_it3.855
r_scbond_it2.555
r_angle_refined_deg1.821
r_mcangle_it1.677
r_mcbond_it0.917
r_chiral_restr0.111
r_bond_refined_d0.018
r_gen_planes_refined0.007
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4152
Nucleic Acid Atoms
Solvent Atoms174
Heterogen Atoms84

Software

Software
Software NamePurpose
SCALEPACKdata scaling
MOLREPphasing
REFMACrefinement
PDB_EXTRACTdata extraction
DENZOdata reduction