X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4BLM 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.2291PEG 4000, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.2745.83

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 43.538α = 90
b = 91.524β = 104.22
c = 66.302γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray2007-11-03MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-007 HF

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.4460.14818395

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4BLM3.540.23579830894.920.179520.17630.2359RANDOM13.684
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.97-1.384.27-2.98
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.384
r_dihedral_angle_3_deg24.733
r_dihedral_angle_4_deg23.554
r_dihedral_angle_1_deg11.388
r_scangle_it4.06
r_angle_refined_deg3.999
r_scbond_it2.666
r_mcangle_it1.426
r_mcbond_it1.061
r_nbtor_refined0.355
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.384
r_dihedral_angle_3_deg24.733
r_dihedral_angle_4_deg23.554
r_dihedral_angle_1_deg11.388
r_scangle_it4.06
r_angle_refined_deg3.999
r_scbond_it2.666
r_mcangle_it1.426
r_mcbond_it1.061
r_nbtor_refined0.355
r_nbd_refined0.346
r_symmetry_vdw_refined0.25
r_chiral_restr0.243
r_symmetry_hbond_refined0.239
r_xyhbond_nbd_refined0.236
r_bond_refined_d0.051
r_gen_planes_refined0.021
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3873
Nucleic Acid Atoms
Solvent Atoms39
Heterogen Atoms52

Software

Software
Software NamePurpose
CrystalCleardata collection
REFMACrefinement
CrystalCleardata reduction
CrystalCleardata scaling