X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4ALLPDB ENTRY 4ALL

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
16.50.1 M K/NA-PHOSPHATE PH 6.5, 36% MPD
Crystal Properties
Matthews coefficientSolvent content
2.9558.29

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 90.23α = 98.24
b = 95.14β = 112.27
c = 95.34γ = 97.27
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2010-06-24MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-4ESRFID14-4

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.949.3392.10.076.412.072066026
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.9292.60.422.07

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 4ALL1.940.931961611042892.070.152180.150030.19274RANDOM30.063
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.790.10.73-1.61-0.66-0.79
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.846
r_dihedral_angle_4_deg19.35
r_dihedral_angle_3_deg15.868
r_dihedral_angle_1_deg6.445
r_scangle_it5.959
r_scbond_it3.961
r_mcangle_it2.263
r_angle_refined_deg1.767
r_mcbond_it1.525
r_chiral_restr0.108
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.846
r_dihedral_angle_4_deg19.35
r_dihedral_angle_3_deg15.868
r_dihedral_angle_1_deg6.445
r_scangle_it5.959
r_scbond_it3.961
r_mcangle_it2.263
r_angle_refined_deg1.767
r_mcbond_it1.525
r_chiral_restr0.108
r_bond_refined_d0.015
r_gen_planes_refined0.014
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms15683
Nucleic Acid Atoms
Solvent Atoms1391
Heterogen Atoms592

Software

Software
Software NamePurpose
REFMACrefinement
iMOSFLMdata reduction
SCALAdata scaling
PHASERphasing