4H2G

Human ecto-5'-nucleotidase (CD73): crystal form II (open) in complex with adenosine


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION8.52921.8 M magnesium sulfate, 0.1 M Tris-HCl , pH 8.5, VAPOR DIFFUSION, temperature 292K
Crystal Properties
Matthews coefficientSolvent content
2.550.86

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 67.1α = 90
b = 131β = 90
c = 66.01γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRAYONIX MX-2252009-07-29MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.20.91841BESSY14.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.5529.3484660

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.5529.188465383411124199.430.129290.128520.17961RANDOM19.744
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.640.46-2.11
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free79.927
r_dihedral_angle_2_deg38.198
r_sphericity_bonded35.325
r_dihedral_angle_4_deg17.407
r_dihedral_angle_3_deg12.888
r_dihedral_angle_1_deg8.318
r_rigid_bond_restr5.147
r_angle_refined_deg1.996
r_chiral_restr0.151
r_bond_refined_d0.022
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free79.927
r_dihedral_angle_2_deg38.198
r_sphericity_bonded35.325
r_dihedral_angle_4_deg17.407
r_dihedral_angle_3_deg12.888
r_dihedral_angle_1_deg8.318
r_rigid_bond_restr5.147
r_angle_refined_deg1.996
r_chiral_restr0.151
r_bond_refined_d0.022
r_gen_planes_refined0.013
r_bond_other_d
r_angle_other_deg
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4078
Nucleic Acid Atoms
Solvent Atoms776
Heterogen Atoms23

Software

Software
Software NamePurpose
REFMACrefinement