X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1HG3 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.52970.5 M sodium chloride, 10% PEG 6000, 0.1 M Tris-HCl
Crystal Properties
Matthews coefficientSolvent content
2.4549.79

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 75.486α = 90
b = 113.963β = 90
c = 114.796γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2702013-07-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPAL/PLS BEAMLINE 7A (6B, 6C1)1.0PAL/PLS7A (6B, 6C1)

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.94509932.47.173921

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1HG31.945070068370799.640.181910.180140.21541RANDOM33.2
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.68-0.31-1.36
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.875
r_dihedral_angle_4_deg14.671
r_dihedral_angle_3_deg11.966
r_long_range_B_refined7.954
r_long_range_B_other7.785
r_scangle_other6.142
r_dihedral_angle_1_deg5.824
r_scbond_it3.994
r_scbond_other3.994
r_mcangle_it3.754
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.875
r_dihedral_angle_4_deg14.671
r_dihedral_angle_3_deg11.966
r_long_range_B_refined7.954
r_long_range_B_other7.785
r_scangle_other6.142
r_dihedral_angle_1_deg5.824
r_scbond_it3.994
r_scbond_other3.994
r_mcangle_it3.754
r_mcangle_other3.754
r_mcbond_other2.719
r_mcbond_it2.718
r_angle_refined_deg1.648
r_angle_other_deg1.389
r_chiral_restr0.103
r_bond_refined_d0.019
r_gen_planes_refined0.009
r_bond_other_d0.008
r_gen_planes_other0.006
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6764
Nucleic Acid Atoms
Solvent Atoms561
Heterogen Atoms28

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing