X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 5FAC 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP293.150.1 M BIS-TRIS propane pH 8.5, 0.2 M NaNO3, 20% (w/v) PEG3350
Crystal Properties
Matthews coefficientSolvent content
2.1743.28

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 79.95α = 90
b = 88.58β = 102.6
c = 108.88γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M-F2015-05-02MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID23-10.968622ESRFID23-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.5148.0696.80.095.32.4224162
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.511.5690.41.0160.82.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT5FAC1.5148.062127791105196.570.199980.198650.22528RANDOM32.274
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.51-0.642.34-0.5
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.453
r_dihedral_angle_4_deg18.18
r_dihedral_angle_3_deg13.811
r_long_range_B_other6.602
r_long_range_B_refined6.6
r_dihedral_angle_1_deg5.902
r_scangle_other5.413
r_mcangle_it4.022
r_mcangle_other4.022
r_scbond_it3.778
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.453
r_dihedral_angle_4_deg18.18
r_dihedral_angle_3_deg13.811
r_long_range_B_other6.602
r_long_range_B_refined6.6
r_dihedral_angle_1_deg5.902
r_scangle_other5.413
r_mcangle_it4.022
r_mcangle_other4.022
r_scbond_it3.778
r_scbond_other3.777
r_mcbond_it3.134
r_mcbond_other3.134
r_angle_refined_deg1.978
r_angle_other_deg1.755
r_chiral_restr0.121
r_bond_refined_d0.019
r_gen_planes_refined0.012
r_bond_other_d0.011
r_gen_planes_other0.008
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms11384
Nucleic Acid Atoms
Solvent Atoms804
Heterogen Atoms113

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
REFMACphasing