X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP293.151% (w/v) Jeffamine ED-2001, 0.1M HEPES pH7.5 and 1M Succinic acid pH7.0
Crystal Properties
Matthews coefficientSolvent content
2.7149.58

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 56.703α = 90
b = 56.703β = 90
c = 66.738γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 2M2015-11-23MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06DA1.00SLSX06DA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.5343.2199.90.029179.421.818085
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.51.530.092166.8870

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.543.211714489199.940.125060.123670.15107RANDOM16.265
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.020.02-0.04
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.951
r_sphericity_free32.218
r_dihedral_angle_4_deg11.76
r_dihedral_angle_3_deg11.376
r_sphericity_bonded9.78
r_dihedral_angle_1_deg7.622
r_long_range_B_other3.547
r_long_range_B_refined3.545
r_scangle_other2.509
r_scbond_it2.053
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.951
r_sphericity_free32.218
r_dihedral_angle_4_deg11.76
r_dihedral_angle_3_deg11.376
r_sphericity_bonded9.78
r_dihedral_angle_1_deg7.622
r_long_range_B_other3.547
r_long_range_B_refined3.545
r_scangle_other2.509
r_scbond_it2.053
r_scbond_other2.044
r_rigid_bond_restr1.946
r_mcangle_it1.68
r_mcangle_other1.678
r_angle_refined_deg1.522
r_mcbond_it1.511
r_mcbond_other1.509
r_angle_other_deg0.988
r_chiral_restr0.106
r_bond_refined_d0.012
r_gen_planes_refined0.008
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms741
Nucleic Acid Atoms
Solvent Atoms87
Heterogen Atoms31

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHENIXphasing