X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION2930.1 M MOPS/HEPES-Na pH 7.5; 0.02 M of each carboxylic acid ; 10% w/v PEG 8000, 20% v/v ethylene glycol G6 Morpheus condition
Crystal Properties
Matthews coefficientSolvent content
2.9858.78

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 92.262α = 90
b = 127.576β = 90
c = 129.988γ = 90
Symmetry
Space GroupI 2 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 300K2017-02-02MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-007 HF1.54

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.849.0594.20.0550.0630.999163.96692430.2
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.9167.70.6590.9160.5710.841.46

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.849.0565251167494.230.190470.189890.2137RANDOM32.702
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.64-0.02-0.62
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.76
r_dihedral_angle_4_deg17.137
r_dihedral_angle_3_deg12.876
r_long_range_B_refined6.908
r_long_range_B_other6.907
r_dihedral_angle_1_deg5.993
r_scangle_other1.658
r_angle_refined_deg1.529
r_mcangle_it1.242
r_mcangle_other1.242
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.76
r_dihedral_angle_4_deg17.137
r_dihedral_angle_3_deg12.876
r_long_range_B_refined6.908
r_long_range_B_other6.907
r_dihedral_angle_1_deg5.993
r_scangle_other1.658
r_angle_refined_deg1.529
r_mcangle_it1.242
r_mcangle_other1.242
r_scbond_it1.006
r_scbond_other0.998
r_angle_other_deg0.963
r_mcbond_it0.738
r_mcbond_other0.732
r_chiral_restr0.091
r_bond_refined_d0.012
r_gen_planes_refined0.007
r_bond_other_d0.002
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3828
Nucleic Acid Atoms
Solvent Atoms364
Heterogen Atoms55

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
MOLREPphasing
XDSdata scaling