X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2X2N 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.529530% PEG MME 550, 30 mM CaCl2, 0.1 M Bis-Tris propane, pH 7.5
Crystal Properties
Matthews coefficientSolvent content
2.1643

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 120.03α = 90
b = 55.04β = 100.07
c = 71.62γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray110PIXELDECTRIS PILATUS3 S 6MMIRRORS2016-09-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.3.11.11587ALS8.3.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.717.6398.30.041114.393.6483320.536.1
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.711.7585.61.440.330.622.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2x2n1.717.6347085252298.550.19760.194840.2486RANDOM39.885
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.4-1.41-0.04-1.04
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.372
r_dihedral_angle_4_deg18.143
r_dihedral_angle_3_deg15.319
r_long_range_B_refined6.722
r_long_range_B_other6.721
r_dihedral_angle_1_deg6.354
r_scangle_other5.483
r_mcangle_it4.215
r_mcangle_other4.215
r_scbond_it3.915
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.372
r_dihedral_angle_4_deg18.143
r_dihedral_angle_3_deg15.319
r_long_range_B_refined6.722
r_long_range_B_other6.721
r_dihedral_angle_1_deg6.354
r_scangle_other5.483
r_mcangle_it4.215
r_mcangle_other4.215
r_scbond_it3.915
r_scbond_other3.914
r_mcbond_it3.381
r_mcbond_other3.367
r_angle_refined_deg2.002
r_angle_other_deg0.918
r_chiral_restr0.124
r_bond_refined_d0.018
r_gen_planes_refined0.009
r_gen_planes_other0.003
r_bond_other_d0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3582
Nucleic Acid Atoms
Solvent Atoms174
Heterogen Atoms116

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
MOLREPphasing