X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 5F2E 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.529329% PEG 4000, 0.2 M CaCl2, 0.1 M Tris pH=8.5
Crystal Properties
Matthews coefficientSolvent content
2.0138.8

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 33.44α = 77.48
b = 39.74β = 81.97
c = 61.78γ = 77.2
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2016-06-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 5.0.30.976484ALS5.0.3

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Rrim I (All)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.3860.03194.50.0490.0640.04110.32.258567
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Rrim I (All)Rpim I (All)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.381.4591.10.330.330.4340.282.32.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT5f2e1.3860.0355678288894.470.15130.14940.1893RANDOM16.153
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.17-0.120.080.280.27-0.06
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.75
r_dihedral_angle_4_deg14.325
r_dihedral_angle_3_deg13.593
r_dihedral_angle_1_deg5.975
r_angle_refined_deg2.477
r_angle_other_deg2.188
r_chiral_restr0.146
r_bond_refined_d0.025
r_gen_planes_refined0.015
r_gen_planes_other0.004
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.75
r_dihedral_angle_4_deg14.325
r_dihedral_angle_3_deg13.593
r_dihedral_angle_1_deg5.975
r_angle_refined_deg2.477
r_angle_other_deg2.188
r_chiral_restr0.146
r_bond_refined_d0.025
r_gen_planes_refined0.015
r_gen_planes_other0.004
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2653
Nucleic Acid Atoms
Solvent Atoms428
Heterogen Atoms148

Software

Software
Software NamePurpose
SCALAdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
MOSFLMdata reduction