X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.42931.2 M AMMONIUM DIBASIC PHOSPHATE, 200 MM KCL, 100 MM IMIDAZOLE
Crystal Properties
Matthews coefficientSolvent content
3.0159.07

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 73.924α = 90
b = 90.169β = 90
c = 113.056γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100AREA DETECTORADSC QUANTUM 315r2014-09-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRF BEAMLINE BL17U10.97869SSRFBL17U1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1350.0199.60.1310.0389.3113.61483973.9
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
133.07698.30.5120.13914.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT350.011483980599.590.209130.207670.23585RANDOM75.03
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-7.977.570.39
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.014
r_dihedral_angle_4_deg15.215
r_long_range_B_refined13.156
r_long_range_B_other13.155
r_dihedral_angle_3_deg12.226
r_scangle_other9.573
r_mcangle_it8.516
r_mcangle_other8.514
r_scbond_it6.856
r_scbond_other6.856
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.014
r_dihedral_angle_4_deg15.215
r_long_range_B_refined13.156
r_long_range_B_other13.155
r_dihedral_angle_3_deg12.226
r_scangle_other9.573
r_mcangle_it8.516
r_mcangle_other8.514
r_scbond_it6.856
r_scbond_other6.856
r_mcbond_it6.037
r_mcbond_other6.037
r_dihedral_angle_1_deg5.408
r_angle_refined_deg1.343
r_angle_other_deg0.92
r_chiral_restr0.074
r_bond_refined_d0.012
r_gen_planes_refined0.006
r_bond_other_d0.002
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4117
Nucleic Acid Atoms
Solvent Atoms5
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PHENIXphasing