X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 5FL4 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP4.52941.0 M DI-AMMONIUM HYDROGEN PHOSPHATE, 0.1 M SODIUM ACETATE PH 4.5, PROTEIN 10 MG/ML, 5-10 MM INHIBITOR (STOCK SOLUTION WAS 100 MM INHIBITOR DISSOLVED IN 100% DIMETHYL SULFOXIDE)
Crystal Properties
Matthews coefficientSolvent content
3.4364.14

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 152.38α = 90
b = 152.38β = 90
c = 171.84γ = 120
Symmetry
Space GroupH 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2018-01-27MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.10.91840BESSY14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7576.1997.60.0559.3314641323.1
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.751.8495.50.50222.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT5FL41.7576.19139211717097.580.168710.167680.18895RANDOM32.277
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.430.220.43-1.4
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.989
r_dihedral_angle_4_deg15.385
r_dihedral_angle_3_deg11.795
r_long_range_B_refined6.083
r_long_range_B_other5.887
r_dihedral_angle_1_deg5.708
r_scangle_other3.961
r_mcangle_it2.938
r_mcangle_other2.938
r_scbond_it2.45
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.989
r_dihedral_angle_4_deg15.385
r_dihedral_angle_3_deg11.795
r_long_range_B_refined6.083
r_long_range_B_other5.887
r_dihedral_angle_1_deg5.708
r_scangle_other3.961
r_mcangle_it2.938
r_mcangle_other2.938
r_scbond_it2.45
r_scbond_other2.45
r_mcbond_it1.879
r_mcbond_other1.877
r_angle_refined_deg1.401
r_angle_other_deg0.916
r_chiral_restr0.076
r_bond_refined_d0.009
r_gen_planes_refined0.007
r_gen_planes_other0.004
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7388
Nucleic Acid Atoms
Solvent Atoms880
Heterogen Atoms140

Software

Software
Software NamePurpose
REFMACrefinement
SCALAdata scaling