X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 6GMZ 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2930.15 M Potassium bromide, 30% PEG MME 2000
Crystal Properties
Matthews coefficientSolvent content
3.3263

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 89.84α = 90
b = 49β = 94.59
c = 155.14γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2015-02-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID23-10.97242ESRFID23-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.37798.38.73178459
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.32.4299.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT6GMZ2.319.9856340301097.830.192270.189510.24411RANDOM33.488
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.02-0.040.07-0.04
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.177
r_dihedral_angle_4_deg19.529
r_dihedral_angle_3_deg18.861
r_long_range_B_refined8.172
r_long_range_B_other8.172
r_dihedral_angle_1_deg7.124
r_scangle_other6.159
r_mcangle_it4.065
r_mcangle_other4.065
r_scbond_it3.828
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.177
r_dihedral_angle_4_deg19.529
r_dihedral_angle_3_deg18.861
r_long_range_B_refined8.172
r_long_range_B_other8.172
r_dihedral_angle_1_deg7.124
r_scangle_other6.159
r_mcangle_it4.065
r_mcangle_other4.065
r_scbond_it3.828
r_scbond_other3.828
r_mcbond_it2.698
r_mcbond_other2.698
r_angle_refined_deg1.915
r_angle_other_deg1.08
r_chiral_restr0.111
r_bond_refined_d0.017
r_gen_planes_refined0.008
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6952
Nucleic Acid Atoms
Solvent Atoms445
Heterogen Atoms32

Software

Software
Software NamePurpose
REFMACrefinement
iMOSFLMdata reduction
SCALAdata scaling
MOLREPphasing