X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION82912microlitres of 15mg/ml protein in 20mM Tris buffer, pH8, with an equivalent volume of reservoir solution containing 0.1M Tris, 2.4M Ammonium sulfate pH8
Crystal Properties
Matthews coefficientSolvent content
2.6253.06

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 46.623α = 90
b = 81.647β = 90
c = 85.264γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M-F2017-03-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I04-10.928DiamondI04-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.3646.6299.90.0430.0480.02113.75.47058516
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.361.3898.51.0481.1950.5620.4861.24.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.3642.6768885110399.030.19690.19650.2237RANDOM19.701
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.33-0.21-0.12
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.652
r_dihedral_angle_1_deg17.623
r_dihedral_angle_4_deg14.139
r_dihedral_angle_3_deg13.404
r_mcangle_it2.401
r_angle_refined_deg1.84
r_mcbond_it1.699
r_mcbond_other1.677
r_angle_other_deg1.557
r_chiral_restr0.084
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.652
r_dihedral_angle_1_deg17.623
r_dihedral_angle_4_deg14.139
r_dihedral_angle_3_deg13.404
r_mcangle_it2.401
r_angle_refined_deg1.84
r_mcbond_it1.699
r_mcbond_other1.677
r_angle_other_deg1.557
r_chiral_restr0.084
r_gen_planes_other0.066
r_gen_planes_refined0.024
r_bond_refined_d0.021
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2159
Nucleic Acid Atoms
Solvent Atoms250
Heterogen Atoms97

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
xia2data reduction
Aimlessdata scaling
Auto-Rickshawphasing