X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1BOZ 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2770.15M KBr, 30% PEGMME 2000
Crystal Properties
Matthews coefficientSolvent content
1.935.17

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 61.569α = 90
b = 61.569β = 90
c = 94.068γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6M2021-02-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONCLSI BEAMLINE 08ID-11.521200CLSI08ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8547.031000.11415.911.216095
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.851.891.086

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE1BOZ1.8539.5411595679199.3520.2430.24050.28532.357
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.4311.431-2.861
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.833
r_dihedral_angle_3_deg17.28
r_dihedral_angle_4_deg13.944
r_dihedral_angle_1_deg7.048
r_lrange_it4.329
r_lrange_other4.289
r_scangle_it2.693
r_scangle_other2.692
r_mcangle_it2.585
r_mcangle_other2.584
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.833
r_dihedral_angle_3_deg17.28
r_dihedral_angle_4_deg13.944
r_dihedral_angle_1_deg7.048
r_lrange_it4.329
r_lrange_other4.289
r_scangle_it2.693
r_scangle_other2.692
r_mcangle_it2.585
r_mcangle_other2.584
r_scbond_it1.61
r_scbond_other1.609
r_mcbond_it1.587
r_mcbond_other1.586
r_angle_refined_deg1.471
r_angle_other_deg1.136
r_nbd_other0.221
r_nbd_refined0.195
r_symmetry_nbd_other0.193
r_symmetry_nbd_refined0.172
r_nbtor_refined0.167
r_xyhbond_nbd_refined0.155
r_symmetry_xyhbond_nbd_refined0.136
r_symmetry_nbtor_other0.075
r_symmetry_xyhbond_nbd_other0.07
r_chiral_restr0.056
r_bond_refined_d0.005
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1495
Nucleic Acid Atoms
Solvent Atoms77
Heterogen Atoms80

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing