X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 7LRL 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP29017.5% PEG 3350, 0.4M Calcium chloride
Crystal Properties
Matthews coefficientSolvent content
2.1342.31

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 58.494α = 90
b = 63.679β = 90
c = 124.637γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2012-05-23MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 5.0.30.976ALS5.0.3

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.634599.20.10418.26.858262
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.631.66990.982.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE7LRL1.63135.43658262287699.1610.1690.16690.200420.756
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.3090.2990.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.733
r_dihedral_angle_4_deg16.542
r_dihedral_angle_3_deg14.375
r_dihedral_angle_1_deg5.843
r_lrange_it5.264
r_lrange_other5.161
r_scangle_it2.383
r_scangle_other2.383
r_angle_refined_deg1.816
r_scbond_other1.559
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.733
r_dihedral_angle_4_deg16.542
r_dihedral_angle_3_deg14.375
r_dihedral_angle_1_deg5.843
r_lrange_it5.264
r_lrange_other5.161
r_scangle_it2.383
r_scangle_other2.383
r_angle_refined_deg1.816
r_scbond_other1.559
r_scbond_it1.558
r_angle_other_deg1.514
r_mcangle_it1.3
r_mcangle_other1.3
r_mcbond_it0.805
r_mcbond_other0.802
r_symmetry_nbd_refined0.323
r_nbd_refined0.223
r_nbd_other0.22
r_xyhbond_nbd_refined0.207
r_symmetry_xyhbond_nbd_refined0.192
r_symmetry_nbd_other0.177
r_nbtor_refined0.175
r_symmetry_xyhbond_nbd_other0.149
r_chiral_restr0.098
r_symmetry_nbtor_other0.082
r_bond_refined_d0.013
r_gen_planes_refined0.011
r_gen_planes_other0.006
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3499
Nucleic Acid Atoms
Solvent Atoms366
Heterogen Atoms81

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing