X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1MICROBATCH2951.0 M Ammonium citrate dibasic, 0.1 M Sodium acetate trihydrate pH 4.6
Crystal Properties
Matthews coefficientSolvent content
2.9758.64

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 52.69α = 90
b = 52.69β = 90
c = 261.83γ = 120
Symmetry
Space GroupP 65 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2020-03-03MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONELETTRA BEAMLINE 11.2C1.5ELETTRA11.2C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.545.699.90.0956.670.157525214.2
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.52.60.198

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.545.5820841199.70.1960.25618.46
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.6850.3430.685-2.223
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.262
r_dihedral_angle_4_deg18.166
r_dihedral_angle_3_deg15.361
r_dihedral_angle_1_deg7.937
r_scangle_it2.789
r_scangle_other2.788
r_mcangle_it2.63
r_mcangle_other2.629
r_angle_other_deg2.479
r_scbond_it1.778
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.262
r_dihedral_angle_4_deg18.166
r_dihedral_angle_3_deg15.361
r_dihedral_angle_1_deg7.937
r_scangle_it2.789
r_scangle_other2.788
r_mcangle_it2.63
r_mcangle_other2.629
r_angle_other_deg2.479
r_scbond_it1.778
r_scbond_other1.777
r_angle_refined_deg1.74
r_mcbond_other1.644
r_mcbond_it1.643
r_nbd_other0.214
r_nbtor_refined0.174
r_nbd_refined0.163
r_xyhbond_nbd_refined0.148
r_chiral_restr0.104
r_bond_other_d0.036
r_bond_refined_d0.014
r_gen_planes_other0.01
r_gen_planes_refined0.009
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1187
Nucleic Acid Atoms
Solvent Atoms64
Heterogen Atoms1

Software

Software
Software NamePurpose
REFMACrefinement
iMOSFLMdata reduction
SCALAdata scaling
AutoSolphasing