X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP42910.1 M PCTP buffer, 25 % w/v PEG 1500
Crystal Properties
Matthews coefficientSolvent content
2.6553.6

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 93.555α = 90
b = 60.406β = 99.88
c = 243.686γ = 90
Symmetry
Space GroupP 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2019-12-14MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I04-10.91188DiamondI04-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7792.1798.70.1680.1950.0970.68563.825834917.4
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.771.897.71.7071.9670.9660.3270.63.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.7792.172453791294998.670.209370.208380.22826RANDOM27.311
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.3-0.70.62-0.64
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.565
r_dihedral_angle_4_deg17.865
r_dihedral_angle_3_deg15.65
r_dihedral_angle_1_deg7.946
r_long_range_B_refined7.067
r_long_range_B_other7.018
r_angle_refined_deg1.537
r_angle_other_deg1.321
r_mcangle_it1.268
r_mcangle_other1.268
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.565
r_dihedral_angle_4_deg17.865
r_dihedral_angle_3_deg15.65
r_dihedral_angle_1_deg7.946
r_long_range_B_refined7.067
r_long_range_B_other7.018
r_angle_refined_deg1.537
r_angle_other_deg1.321
r_mcangle_it1.268
r_mcangle_other1.268
r_scangle_other1.134
r_scbond_it0.739
r_scbond_other0.739
r_mcbond_it0.687
r_mcbond_other0.687
r_chiral_restr0.091
r_bond_refined_d0.013
r_gen_planes_refined0.009
r_gen_planes_other0.002
r_bond_other_d0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms17596
Nucleic Acid Atoms
Solvent Atoms1542
Heterogen Atoms333

Software

Software
Software NamePurpose
REFMACrefinement
DIALSdata scaling
xia2data reduction
PHASERphasing