1DMR | pdb_00001dmr


PGD: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE

PGD is a Ligand Of Interest in 1DMR designated by the RCSB
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Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter1DMR_PGD_A_782Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter1DMR_PGD_A_782Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter1DMR_PGD_A_782Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
1DMR_PGD_A_782 98% 10% 0.063 0.9852.67 1.66 14 810100%1
1DMR_PGD_A_783 97% 10% 0.065 0.9832.71 1.62 17 700100%1
4DMR_PGD_A_782 91% 11% 0.086 0.9712.64 1.53 15 420100%1
2DMR_PGD_A_782 76% 8% 0.138 0.9762.79 1.81 16 1020100%1
3DMR_PGD_A_782 64% 9% 0.138 0.9362.72 1.83 14 810100%1
9H4T_PGD_B_902 91% 44% 0.073 0.9611.03 1.14 4 300100%1