1E3M | pdb_00001e3m


ADP: ADENOSINE-5'-DIPHOSPHATE

ADP is a Ligand Of Interest in 1E3M designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter1E3M_ADP_A_1801Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter1E3M_ADP_A_1801Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter1E3M_ADP_A_1801Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
1E3M_ADP_A_1801 94% 34% 0.068 0.9661.17 1.45 2 300100%1
1WB9_ADP_A_1801 93% 30% 0.082 0.9771.28 1.51 2 300100%1
1OH6_ADP_A_1801 88% 29% 0.102 0.9791.13 1.7 2 400100%1
1WBD_ADP_A_1801 87% 32% 0.101 0.9751.33 1.37 2 310100%1
3K0S_ADP_A_1801 87% 40% 0.106 0.9770.94 1.4 1 310100%1
1WBB_ADP_A_1801 86% 30% 0.104 0.9731.24 1.52 2 300100%1
3KB1_ADP_A_301 100% 22% 0.021 0.9962.06 1.21 6 410100%1
3TW6_ADP_B_2000 100% 44% 0.019 0.9970.83 1.34 - 430100%1
5GZA_ADP_A_401 100% 2% 0.019 0.9973.36 3.39 13 1110100%1
5KHW_ADP_A_1201 100% 41% 0.023 0.9951.1 1.2 1 200100%1
8VZA_ADP_A_603 100% 37% 0.024 0.9950.96 1.51 1 500100%1