Ligand validation:1RD8

NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose

NAG is a Ligand Of Interest in 1RD8 designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
1RD8_NAG_B_183	6%	45%	0.401	0.831	0.56	1.53	-	4	2	1	100%	0.9333
1RD8_NAG_A_1	5%	24%	0.413	0.828	1.08	2.03	1	6	0	1	100%	0.9333
1RD8_NAG_E_330	5%	12%	0.297	0.692	1.49	2.59	3	7	0	1	100%	0.9333
1RD8_NAG_C_330	2%	24%	0.462	0.758	1.09	2	1	6	0	1	100%	0.9333
1RD8_NAG_A_2	2%	43%	0.337	0.614	0.57	1.6	-	3	0	1	100%	0.9333
1RD8_NAG_C_335	0%	47%	0.425	0.479	0.74	1.28	-	2	0	0	100%	0.9333
5UG0_NAG_A_402	77%	43%	0.087	0.925	0.4	1.78	-	2	0	0	100%	0.9333
2WRG_NAG_J_1328	73%	24%	0.091	0.918	0.64	2.44	-	6	3	0	100%	1
5W6G_NAG_A_404	49%	60%	0.149	0.895	0.31	1.19	-	2	0	0	100%	0.9333
3GBN_NAG_A_330	37%	45%	0.206	0.904	0.72	1.4	1	1	1	0	100%	0.9333
4PY8_NAG_A_404	31%	44%	0.195	0.863	0.69	1.47	-	2	0	0	100%	0.9333
3PPS_NAG_B_760	100%	44%	0.028	0.993	0.57	1.57	-	3	0	0	100%	0.9333
4AKM_NAG_A_1379	100%	67%	0.029	0.994	0.54	0.73	-	-	0	0	100%	0.9333
3CQL_NAG_B_244	100%	68%	0.029	0.987	0.42	0.8	-	-	0	0	100%	1
3RIK_NAG_D_509	100%	8%	0.035	0.991	2.03	2.54	4	7	2	0	100%	0.9333
5VEM_NAG_B_509	100%	74%	0.003	0.957	0.46	0.56	-	-	0	0	100%	0.9333

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.