Ligand validation:2DB4

LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE

LHG is a Ligand Of Interest in 2DB4 designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Model completeness	Average occupancy
2DB4_LHG_J_203	8%	43%	0.29	0.805	1.08	1.12	2	3	0	82%	0.8163
2DB4_LHG_I_203	8%	43%	0.316	0.831	1.08	1.12	2	3	0	82%	0.8163
2DB4_LHG_A_204	7%	45%	0.335	0.815	1.05	1.06	2	2	7	82%	0.8163
2DB4_LHG_G_204	6%	43%	0.317	0.78	1.07	1.14	2	3	0	82%	0.8163
2DB4_LHG_F_203	6%	44%	0.327	0.787	1.08	1.1	2	3	0	82%	0.8163
2DB4_LHG_D_204	6%	43%	0.308	0.765	1.08	1.12	2	3	0	82%	0.8163
2DB4_LHG_H_203	5%	45%	0.348	0.782	1.05	1.07	2	2	5	82%	0.8163
2DB4_LHG_B_203	4%	43%	0.337	0.751	1.08	1.13	2	3	0	82%	0.8163
2DB4_LHG_C_203	4%	43%	0.339	0.752	1.09	1.1	2	3	0	82%	0.8163
2DB4_LHG_F_205	4%	43%	0.336	0.748	1.08	1.12	2	3	0	82%	0.8163
2DB4_LHG_J_204	4%	46%	0.368	0.779	1.05	1.02	2	2	4	82%	0.8163
2DB4_LHG_G_203	4%	46%	0.365	0.763	1.04	1.06	2	2	7	82%	0.8163
2DB4_LHG_B_204	3%	45%	0.338	0.728	1.05	1.06	2	2	6	82%	0.8163
2DB4_LHG_A_203	3%	43%	0.349	0.726	1.08	1.13	2	3	0	82%	0.8163
2DB4_LHG_E_203	3%	45%	0.374	0.748	1.05	1.06	2	2	6	82%	0.8163
2DB4_LHG_D_203	3%	45%	0.379	0.752	1.05	1.06	2	2	6	82%	0.8163
2DB4_LHG_C_204	3%	46%	0.362	0.72	1.04	1.05	2	2	6	82%	0.8163
2DB4_LHG_F_204	3%	46%	0.387	0.742	1.04	1.06	2	2	6	82%	0.8163
2DB4_LHG_I_204	2%	45%	0.376	0.72	1.05	1.07	2	2	4	82%	0.8163
2DB4_LHG_C_205	2%	44%	0.362	0.698	1.07	1.11	2	3	0	82%	0.8163
2CYD_LHG_F_5159	4%	45%	0.313	0.736	1.05	1.07	2	2	6	82%	0.8163
2BL2_LHG_C_1158	3%	49%	0.263	0.617	0.98	0.98	2	2	2	100%	1
5GTI_LHG_L_101	99%	46%	0.045	0.971	0.91	1.17	2	4	0	100%	1
5V2C_LHG_l_101	98%	46%	0.068	0.987	0.91	1.18	2	3	0	100%	1
5WS6_LHG_d_407	96%	54%	0.063	0.973	0.89	0.9	2	3	0	100%	1
7RF1_LHG_D_410	91%	47%	0.087	0.974	0.92	1.14	2	5	0	100%	1
8IRC_LHG_L_101	91%	47%	0.092	0.978	0.88	1.15	2	4	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

2DB4

LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE

LHG is a Ligand Of Interest in 2DB4 designated by the RCSB